AMPtk

Description

amptk website

AMPtk is a series of scripts to process NGS amplicon data using USEARCH and VSEARCH, it can also be used to process any NGS amplicon data and includes databases setup for analysis of fungal ITS, fungal LSU, bacterial 16S, and insect COI amplicons. It can handle Ion Torrent, MiSeq, and 454 data.

Environment Modules

Run module spider amptk to find out what environment modules are available for this application.

Environment Variables

• HPC_AMPTK_DIR - installation directory
• HPC_AMPTK_BIN - executable directory
• HPC_AMPTK_DOC - documentation directory
• HPC_AMPTK_DB - database directory

Categories

biology, ngs