amphora2¶
Description¶
An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.
Environment Modules¶
Run module spider amphora2 to find out what environment modules are available for this application.
Environment Variables¶
- HPC_AMPHORA2_DIR - installation directory
- HPC_AMPHORA2_BIN - executable directory
- HPC_AMPHORA2_DOC - documentation directory
- HPC_AMPHORA2_EXE - test data directory
- HPC_AMPHORA2_TAX - taxonomy data directory
- HPC_AMPHORA2_TREE - tree data directory
Citation¶
If you publish research that uses amphora2 you have to cite it as follows:
Wu, M., & Scott, A. J. (2012). Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2. Bioinformatics (Oxford, England), 28(7), 1033–1034. https://doi.org/10.1093/bioinformatics/bts079
Categories¶
biology, phylogenetics