amPEPpy¶

Description¶

amPEPpy is a Python 3 application that implements a random forest classifier for predicting antimicrobial peptide sequences using the Distribution descriptor set from the Global Protein Sequence Descriptors. amPEPpy has improved portability, increased accuracy relative to similar methods, and includes utilities for easily training and optimizing random forest classifiers on novel training data.

Environment Modules¶

Run module spider ampeppy to find out what environment modules are available for this application.

Environment Variables¶

HPC_AMPEPPY_DIR - installation directory
HPC_AMPEPPY_BIN - executable directory

Citation¶

If you publish research that uses ampeppy you have to cite it as follows:

https://github.com/tlawrence3/amPEPpy#citing

Categories¶

phylogenetics