AlphaFold

Description

alphafold3 website

This package provides a container that can be used to run AlphaFold 3.0. Due to licensing restrictions, it does not provide a complete installation. Individual researchers must obtain approval from Google to download the model parameters required by AlphFold 3. Instructions for running AlphaFold 3 from the container can be found at the end of https://github.com/google-deepmind/alphafold3/blob/main/docs/installation.md. AlphaFold3 also requires a writable directory of genetic database files. The files can be found in /data/reference/alphafold/3.0.0 but will need to be copied or linked to a user writable directory.

Environment Modules

Run module spider alphafold3 to find out what environment modules are available for this application.

Environment Variables

• HPC_ALPHAFOLD_IMG - container image
• HPC_ALPHAFOLD_REF - reference directory

Categories

protein, structure, machine_learning