ALLPATHS-LG¶

Description¶

ALLPATHS-LG is a short read assembler. It has been designed to use reads produced by new sequencing technology machines such as the Illumina Genome Analyzer. This version has been optimized for, but not necessarily limited to, reads of length 100 bases. ALLPATHS is not designed to assemble Sanger or 454 FLX reads, or a mix of these with short reads.

Environment Modules¶

Run module spider allpaths to find out what environment modules are available for this application.

Environment Variables¶

HPC_ALLPATHSLG_DIR - installation directory
HPC_ALLPATHSLG_BIN - executable directory
HPC_ALLPATHSLG_DOC - documentation directory

Categories¶

biology, ngs