allhic¶
Description¶
Phasing and scaffolding polyploid genomes based on Hi-C data.
Environment Modules¶
Run module spider allhic to find out what environment modules are available for this application.
Environment Variables¶
- HPC_ALLHIC_DIR - installation directory
- HPC_ALLHIC_BIN - executable directory
Citation¶
If you publish research that uses allhic you have to cite it as follows:
Zhang, X., Zhang, S., Zhao, Q., Ming, R., & Tang, H. (2019). Assembly of allele-aware, chromosomal scale autopolyploid genomes based on Hi-C data. Nature Plants, 5(8), 833–845. https://doi.org/10.1038/s41477-019-0487-8
Zhang, J., Zhang, X., Tang, H., Zhang, Q., Li, J., Wang, Y., … & Ming, R. (2018). Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. Nature Genetics, 50(11), 1565–1573. https://doi.org/10.1038/s41588-018-0237-2
Categories¶
genomics, biology