allhic¶
Description¶
Phasing and scaffolding polyploid genomes based on Hi-C data.
Environment Modules¶
Run module spider allhic to find out what environment modules are available for this application.
Environment Variables¶
- HPC_ALLHIC_DIR - installation directory
- HPC_ALLHIC_BIN - executable directory
Citation¶
If you publish research that uses allhic you have to cite it as follows:
Zhang, X. Zhang, S. Zhao, Q. Ming, R. Tang, H. Assembly of allele-aware, chromosomal scale autopolyploid genomes based on Hi-C data. Nature Plants, doi:10.1038/s41477-019-0487-8 (2019).
Zhang, J. Zhang, X. Tang, H. Zhang, Q. et al. Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. Nature Genetics, doi:10.1038/s41588-018-0237-2 (2018).
Categories¶
genomics, biology