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AliStat

Description

alistat website

Multiple sequence alignments may contain a variety of completely-specified characters. Here a completely-specified character is defined as a letter that has an unambiguous meaning (otherwise, the character is incompletely specified and will have several meanings, as described in the next sub-section).

Environment Modules

Run module spider alistat to find out what environment modules are available for this application.

Environment Variables

  • HPC_ALISTAT_DIR - installation directory
  • HPC_ALISTAT_BIN - executable directory
  • HPC_ALISTAT_DOC - documentation directory
  • HPC_ALISTAT_EXE - examples directory

Citation

If you publish research that uses alistat you have to cite it as follows:

Wong, T. K. F., Kalyaanamoorthy, S., Meusemann, K., Yeates, D. K., Misof, B., & Jermiin, L. S. (2020). A minimum reporting standard for multiple sequence alignments. NAR Genomics and Bioinformatics, 2(2), lqaa024. https://doi.org/10.1093/nargab/lqaa024

Categories

phylogenetics