AfterQC¶
Description¶
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data AfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair. Currently it supports processing data from HiSeq 2000/2500/3000/4000, Nextseq 500/550, MiniSeq...and other Illumina 0.9.7 or newer formats
Environment Modules¶
Run module spider afterqc to find out what environment modules are available for this application.
Environment Variables¶
- HPC_AFTERQC_DIR - installation directory
- HPC_AFTERQC_BIN - executable directory
- HPC_AFTERQC_MAN - manual directory
Citation¶
If you publish research that uses afterqc you have to cite it as follows:
Categories¶
phylogenetics