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3d-dna

Description

3d-dna website

This code is designed to enable anyone to reproduce the Hs2-HiC and the AaegL4 genomes reported in: Dudchenko et al., De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science, 2017.

Environment Modules

Run module spider 3d-dna to find out what environment modules are available for this application.

Environment Variables

  • HPC_3DDNA_DIR - installation directory
  • HPC_3DDNA_BIN - executable directory
  • HPC_3DDNA_DOC - documentation directory

Citation

If you publish research that uses this software you have to cite it as follows:

Dudchenko, O., Batra, S. S., Omer, A. D., Nyquist, S. K., Hoeger, M., Durand, N. C., Shamim, M. S., Machol, I., Lander, E. S., Aiden, A. P., & Aiden, E. L. (2017). De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science (New York, N.Y.), 356(6333), 92–95. https://doi.org/10.1126/science.aal3327

Categories

biology, phylogenetics